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1 to 10 of 3,404 Results

ICTVTree.fasta Nov 19, 2025 - Phylogenetic dataset and documents for the ICTV Taxonomy Proposal: Create 4 new species in the genera Alphapolyomavirus and Betapolyomavirus (Polyomaviridae) (2024.003D.Polyomaviridae_4ns) Unknown - 391.7 KB - MD5: 761d91cef0dbb19625e6a8f1bbcd2c72 ICTV Report on the family: Polyomaviridae resource file, alignment file used for the inference of the phylogenetic tree seen in the report, augmented with 4 LTAg (Large Tumor Antigen) gene nucleotide sequences of the polyomaviruses discussed in the proposal.
ICTVTree.nwk Nov 19, 2025 - Phylogenetic dataset and documents for the ICTV Taxonomy Proposal: Create 4 new species in the genera Alphapolyomavirus and Betapolyomavirus (Polyomaviridae) (2024.003D.Polyomaviridae_4ns) Unknown - 8.0 KB - MD5: b1a2a7b4b04e6459df3318ac57d167ba Phylogenetic tree reconstruction results in Newick format, based on LTAg (Large Tumor Antigen) gene nucleotide sequences, using PhyML 3.3.1, with GTR+G+I model, SPR for topology and SH-like aLRT method for branch support.
ICTVTree_einsi.fasta Nov 19, 2025 - Phylogenetic dataset and documents for the ICTV Taxonomy Proposal: Create 4 new species in the genera Alphapolyomavirus and Betapolyomavirus (Polyomaviridae) (2024.003D.Polyomaviridae_4ns) Unknown - 637.6 KB - MD5: e913dc65c66cc2463a902cbde641731a Multiple alignment of LTAg (Large Tumor Antigen) gene nucleotide sequences of polyomaviruses used for phylogenetic analysis, including the 4 polyomaviruses discussed in the proposal, using MAFFT 7.49 with the E-INS-i algorithm.
LTAg_eins.fasta Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus Unknown - 575.1 KB - MD5: 85535f89cb425aa0f0760821355c6b71 Multiple alignment of LTAg (Large Tumor Antigen) gene nucleotide sequences of polyomaviruses used for phylogenetic analysis, including the the Castor fiber polyomavirus 1, using MAFFT 7.49 with the E-INS-i algorithm.
LTAg_seq.fasta Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus Unknown - 371.9 KB - MD5: 26b18b21c06a2a8967413a6e348ac367 ICTV Report on the family: Polyomaviridae resource file, alignment file used for the inference of the phylogenetic tree seen in the report, augmented with the Castor fiber polyomavirus 1 LTAg (Large Tumor Antigen) gene nucleotide sequence.
LTAg_tree.nwk Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus Unknown - 7.4 KB - MD5: 2ed2bbb8c15927cc5d32dfeb19264d78 Phylogenetic tree reconstruction results in Newick format, based on LTAg (Large Tumor Antigen) gene sequences, using PhyML 3.3.1, with GTR+G+I model, SPR for topology and SH-like aLRT method for branch support.
VP1_fftnsi.fasta Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus Unknown - 231.5 KB - MD5: 32f9f41d84800c21554a1709978d291c Multiple alignment of VP1 (major capsid protein) gene nucleotide sequences of polyomaviruses used for phylogenetic analysis, using MAFFT 7.49 with the FFT-NS-i algorithm.
VP1_seq.fasta Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus Unknown - 136.7 KB - MD5: 23688e0a47039960342b5ac0e5c0b4dd Raw VP1 (major capsid protein) gene nucleotide sequences of polyomaviruses used for phylogenetic analysis.
VP1_tree.nwk Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus Unknown - 7.5 KB - MD5: 6d67b88b31619f54d020a03651720138 Phylogenetic tree reconstruction results in Newick format, based on VP1 (major capsid protein) gene sequences, using PhyML 3.3.1, with GTR+G+I model, SPR for topology and SH-like aLRT method for branch support.
LTAg_eins.fasta Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2023. Vesper bat polyomaviruses in Central Europe Unknown - 117.3 KB - MD5: e23c75282b637c9fa3890d5f1519905f Multiple alignment of LTAg (Large Tumor Antigen) gene amino acid sequences of polyomaviruses used for phylogenetic analysis, using MAFFT 7.49 with the E-INS-i algorithm.

ICTVTree.fasta

Nov 19, 2025 - Phylogenetic dataset and documents for the ICTV Taxonomy Proposal: Create 4 new species in the genera Alphapolyomavirus and Betapolyomavirus (Polyomaviridae) (2024.003D.Polyomaviridae_4ns)

Unknown - 391.7 KB -

ICTV Report on the family: Polyomaviridae resource file, alignment file used for the inference of the phylogenetic tree seen in the report, augmented with 4 LTAg (Large Tumor Antigen) gene nucleotide sequences of the polyomaviruses discussed in the proposal.

ICTVTree.nwk

Unknown - 8.0 KB -

Phylogenetic tree reconstruction results in Newick format, based on LTAg (Large Tumor Antigen) gene nucleotide sequences, using PhyML 3.3.1, with GTR+G+I model, SPR for topology and SH-like aLRT method for branch support.

ICTVTree_einsi.fasta

Unknown - 637.6 KB -

Multiple alignment of LTAg (Large Tumor Antigen) gene nucleotide sequences of polyomaviruses used for phylogenetic analysis, including the 4 polyomaviruses discussed in the proposal, using MAFFT 7.49 with the E-INS-i algorithm.

LTAg_eins.fasta

Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus

Unknown - 575.1 KB -

Multiple alignment of LTAg (Large Tumor Antigen) gene nucleotide sequences of polyomaviruses used for phylogenetic analysis, including the the Castor fiber polyomavirus 1, using MAFFT 7.49 with the E-INS-i algorithm.

LTAg_seq.fasta

Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus

Unknown - 371.9 KB -

ICTV Report on the family: Polyomaviridae resource file, alignment file used for the inference of the phylogenetic tree seen in the report, augmented with the Castor fiber polyomavirus 1 LTAg (Large Tumor Antigen) gene nucleotide sequence.

LTAg_tree.nwk

Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus

Unknown - 7.4 KB -

Phylogenetic tree reconstruction results in Newick format, based on LTAg (Large Tumor Antigen) gene sequences, using PhyML 3.3.1, with GTR+G+I model, SPR for topology and SH-like aLRT method for branch support.

VP1_fftnsi.fasta

Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus

Unknown - 231.5 KB -

Multiple alignment of VP1 (major capsid protein) gene nucleotide sequences of polyomaviruses used for phylogenetic analysis, using MAFFT 7.49 with the FFT-NS-i algorithm.

VP1_seq.fasta

Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus

Unknown - 136.7 KB -

Raw VP1 (major capsid protein) gene nucleotide sequences of polyomaviruses used for phylogenetic analysis.

VP1_tree.nwk

Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus

Unknown - 7.5 KB -

Phylogenetic tree reconstruction results in Newick format, based on VP1 (major capsid protein) gene sequences, using PhyML 3.3.1, with GTR+G+I model, SPR for topology and SH-like aLRT method for branch support.

LTAg_eins.fasta

Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2023. Vesper bat polyomaviruses in Central Europe

Unknown - 117.3 KB -

Multiple alignment of LTAg (Large Tumor Antigen) gene amino acid sequences of polyomaviruses used for phylogenetic analysis, using MAFFT 7.49 with the E-INS-i algorithm.

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