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21 to 30 of 3,420 Results

LTAg_seq.fasta Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus Unknown - 371.9 KB - MD5: 26b18b21c06a2a8967413a6e348ac367 ICTV Report on the family: Polyomaviridae resource file, alignment file used for the inference of the phylogenetic tree seen in the report, augmented with the Castor fiber polyomavirus 1 LTAg (Large Tumor Antigen) gene nucleotide sequence.
LTAg_tree.nwk Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus Unknown - 7.4 KB - MD5: 2ed2bbb8c15927cc5d32dfeb19264d78 Phylogenetic tree reconstruction results in Newick format, based on LTAg (Large Tumor Antigen) gene sequences, using PhyML 3.3.1, with GTR+G+I model, SPR for topology and SH-like aLRT method for branch support.
VP1_fftnsi.fasta Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus Unknown - 231.5 KB - MD5: 32f9f41d84800c21554a1709978d291c Multiple alignment of VP1 (major capsid protein) gene nucleotide sequences of polyomaviruses used for phylogenetic analysis, using MAFFT 7.49 with the FFT-NS-i algorithm.
VP1_seq.fasta Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus Unknown - 136.7 KB - MD5: 23688e0a47039960342b5ac0e5c0b4dd Raw VP1 (major capsid protein) gene nucleotide sequences of polyomaviruses used for phylogenetic analysis.
VP1_tree.nwk Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus Unknown - 7.5 KB - MD5: 6d67b88b31619f54d020a03651720138 Phylogenetic tree reconstruction results in Newick format, based on VP1 (major capsid protein) gene sequences, using PhyML 3.3.1, with GTR+G+I model, SPR for topology and SH-like aLRT method for branch support.
LTAg_eins.fasta Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2023. Vesper bat polyomaviruses in Central Europe Unknown - 117.3 KB - MD5: e23c75282b637c9fa3890d5f1519905f Multiple alignment of LTAg (Large Tumor Antigen) gene amino acid sequences of polyomaviruses used for phylogenetic analysis, using MAFFT 7.49 with the E-INS-i algorithm.
LTAg_seq.fasta Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2023. Vesper bat polyomaviruses in Central Europe Unknown - 64.6 KB - MD5: c02e1ad8119f9bc67e0d1ce9ab67f255 Raw LTAg (Large Tumor Antigen) gene amino acid sequences of polyomaviruses used for phylogenetic analysis.
LTAg_tree.nwk Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2023. Vesper bat polyomaviruses in Central Europe Unknown - 5.5 KB - MD5: d3dc10a36d400c8de20e218835a7586f Phylogenetic tree reconstruction results in Newick format, based on LTAg (Large Tumor Antigen) gene sequences, using PhyML 3.3.1, with LG+G+I model, SPR for topology and SH-like method for branch support.
DatasetS1.fasta Nov 5, 2025 - Kóczán et al. 2025. Histomonas MS supplementary material Unknown - 29.4 KB - MD5: 737bf886aef19fc8da32675d70d20b42 Dermanyssus gallinae COX1 alignment
DatasetS2.fasta Nov 5, 2025 - Kóczán et al. 2025. Histomonas MS supplementary material Unknown - 31.6 KB - MD5: bcb12f3a925e79bfc697ef85c77e4db6 Histomonas meleagridis 18S rRNA gene alignment

LTAg_seq.fasta

Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus

Unknown - 371.9 KB -

ICTV Report on the family: Polyomaviridae resource file, alignment file used for the inference of the phylogenetic tree seen in the report, augmented with the Castor fiber polyomavirus 1 LTAg (Large Tumor Antigen) gene nucleotide sequence.

LTAg_tree.nwk

Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus

Unknown - 7.4 KB -

Phylogenetic tree reconstruction results in Newick format, based on LTAg (Large Tumor Antigen) gene sequences, using PhyML 3.3.1, with GTR+G+I model, SPR for topology and SH-like aLRT method for branch support.

VP1_fftnsi.fasta

Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus

Unknown - 231.5 KB -

Multiple alignment of VP1 (major capsid protein) gene nucleotide sequences of polyomaviruses used for phylogenetic analysis, using MAFFT 7.49 with the FFT-NS-i algorithm.

VP1_seq.fasta

Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus

Unknown - 136.7 KB -

Raw VP1 (major capsid protein) gene nucleotide sequences of polyomaviruses used for phylogenetic analysis.

VP1_tree.nwk

Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2024. Eurasian beaver polyomavirus

Unknown - 7.5 KB -

Phylogenetic tree reconstruction results in Newick format, based on VP1 (major capsid protein) gene sequences, using PhyML 3.3.1, with GTR+G+I model, SPR for topology and SH-like aLRT method for branch support.

LTAg_eins.fasta

Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2023. Vesper bat polyomaviruses in Central Europe

Unknown - 117.3 KB -

Multiple alignment of LTAg (Large Tumor Antigen) gene amino acid sequences of polyomaviruses used for phylogenetic analysis, using MAFFT 7.49 with the E-INS-i algorithm.

LTAg_seq.fasta

Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2023. Vesper bat polyomaviruses in Central Europe

Unknown - 64.6 KB -

Raw LTAg (Large Tumor Antigen) gene amino acid sequences of polyomaviruses used for phylogenetic analysis.

LTAg_tree.nwk

Nov 12, 2025 - Phylogenetic dataset and supplementary material for Surján et al. 2023. Vesper bat polyomaviruses in Central Europe

Unknown - 5.5 KB -

Phylogenetic tree reconstruction results in Newick format, based on LTAg (Large Tumor Antigen) gene sequences, using PhyML 3.3.1, with LG+G+I model, SPR for topology and SH-like method for branch support.

DatasetS1.fasta

Nov 5, 2025 - Kóczán et al. 2025. Histomonas MS supplementary material

Unknown - 29.4 KB -

Dermanyssus gallinae COX1 alignment

DatasetS2.fasta

Nov 5, 2025 - Kóczán et al. 2025. Histomonas MS supplementary material

Unknown - 31.6 KB -

Histomonas meleagridis 18S rRNA gene alignment

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